View source for Parameter fitting (analysis)

==== Parameters: ====

* '''Input diagram''' – Input diagram
* '''Experiment table''' – Experiment table
* '''Regime''' – Regime
* '''Data column''' – Data column
* '''Algorithm''' – Algorithm
** '''type''' – type
** '''Iterations number''' – Iterations number
** '''Survival size''' – Survival size
* '''Result''' – Result
* '''Simulation engine''' – Simulation engine
** '''Selected engine''' – Selected simulation engine.
** '''Java simulation engine''' – Deterministic simulation engine to solve system of odinary differential equations.
*** '''Initial time''' – Initial time.
*** '''Completion time''' – Completion time.
*** '''Time increment''' – Time increment.
*** '''Simulator name''' – Simulator name.
*** '''Simulator options''' – Simulator options.
**** '''Absolute tolerance''' – Absolute tolerance.
**** '''Relative tolerance''' – Relative tolerance.
**** '''Statistics mode''' – Statistics mode.
**** '''Integration method''' – Integration method (ADAMS or BDF)
**** '''Inner linear solver type''' – Inner linear solver type
**** '''Jacobian approximation type''' – Jacobian approximation type
**** '''Steps limit''' – Limitation for solver steps count
**** '''Minimum time step''' – Minimum time step.
**** '''Maximum time step inverted''' – 1 / maximum time step.
**** '''Mu''' – Upper bandwidth of Banded Jacobian
**** '''Ml''' – Lower bandwidth of Banded Jacobian
**** '''Detect incorrect numbers (NaNs and Infs)''' – If true then simulation will end when NaN or Infinity encountered
*** '''Code generation type''' – Type of code generation: if auto then BioUML will try to choose by itself.
*** '''Constraints violation''' – How to handle constraints violation in the model.
*** '''Fast reactions handling''' – Method to handle fast reactions: either as separate ODE system with very fast rate or as algebraic system.
*** '''Algebraic solver name''' – Name of algebraic solver which will be used
*** '''Algebraic Solver parameters''' – Parameters of algebraic solver which will be used
**** '''Maximum iterations''' – Maximum iterations
**** '''Function tolerance''' – Function tolerance
**** '''Minimal gradient tolerance''' – Minimal gradient tolerance
**** '''Points tolerance''' – Points tolerance

[[Category:Analyses]]
[[Category:Parameter fitting (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]