View source for Transcriptome mappability (analysis)

==== Parameters: ====

* '''Minimal unique length''' – Minimal unique length file, produced by <nowiki>'</nowiki>Transcriptome minimal unique length<nowiki>'</nowiki> analysis
* '''Read length distribution''' – Table with ids corresponding to read length and <nowiki>'</nowiki>Count<nowiki>'</nowiki> column
* '''Transcript subset''' – Use only transcripts present in this table
* '''Mappability profile''' – Resulting mappability profile
* '''Transcript mappable length''' – Number of mappable positions for each transcript
* '''CDS mappable length''' – Number of mappable position in coding sequence
* '''Min CDS overlap''' – Min CDS overlap
* '''Transcript set''' – Transcript set
** '''Annotation source''' – Source of gene annotation
** '''Transcripts annotation track''' – Track with transcripts annotation in BED format
** '''Genome sequence''' – Collection of chromosomal sequences
** '''Ensembl''' – Ensembl database version
** '''Transcript subset''' – Subset of transcripts used in this analysis
** '''GTF file''' – GTF file

[[Category:Analyses]]
[[Category:Sequence mappability (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]