View source for Sites genome location for folders (analysis)

;Analysis title
:[[File:Default-analysis-icon.png]] Sites genome location for folders
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.gtrd.analysis.SiteGenomeLocationForFolders}}
;Plugin
:[[Biouml.plugins.gtrd (plugin)|biouml.plugins.gtrd (GTRD)]]

==== Description ====
Count TSS and/or repeats for experiments

==== Parameters: ====

* '''organism''' – choose organism, for wich you will analyze tracks
* '''path to input folder''' – path to folder with experiments
* '''Change sites size''' – change miniml size of the sites
* '''write sites size''' – write miniml size of the sites
* '''Count repeats in track''' – Count repeats in track
* '''Count TSS in track''' – Count TSS in track
* '''Upstream''' – Choose - N nucleotides from TSS
* '''Downstream''' – Choose + N nucleotides from TSS
* '''number of threads''' – number of threads
* '''output name''' – write name of putput file
* '''Record result to GTRD database''' – Record result to GTRD database
* '''write new table''' – record new table to GTRD database
* '''write data to existed table''' – record data to existed table in GTRD database
* '''nameOfExistedTable''' – nameOfExistedTable
* '''path to output folder''' – path to output folder

[[Category:Analyses]]
[[Category:GTRD build (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]