Difference between revisions of "IPS motif discovery (analysis)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
Revision as of 12:32, 16 May 2013
- Analysis title
- File:IPS-motif-discovery-analysis-icon.png IPS motif discovery
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Discover motifs in the sequence set
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
