Difference between revisions of "SAM or BAM alignment file"

Latest revision as of 17:17, 6 June 2013

Import SAM/BAM file

File to import – Specify file from your computer
Target – Path in repository to put imported file to
Properties – Additional importer parameters
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Genome ID string – Something like 'hg18' or 'mm6'
- Create index – Create index (can take a long time)

@@ Line 1: / Line 1: @@
 ;File format title
 :SAM or BAM alignment file (*.sam, *.bam)
+;Element type
+:{{Type link|track}}
 ;Plugin
 :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
@@ Line 13: / Line 15: @@
 * '''Properties''' – Additional importer parameters
 ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
-** '''Sequence collection''' – Sequence collection
+** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
 ** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
 ** '''Create index''' – Create index (can take a long time)