Difference between revisions of "Binding regions summary (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Input track''' – Select input ChIP-seq track (must be | + | * '''Input track''' – Select input ChIP-seq track (must be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis) |
* '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column) | * '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column) | ||
* '''Path to output folder''' – Output folder will be created under this location | * '''Path to output folder''' – Output folder will be created under this location | ||
Revision as of 17:39, 7 June 2013
- Analysis title
- File:Binding-regions-Binding-regions-summary-icon.png Binding regions summary
- Provider
- Institute of Systems Biology
- Class
BindingRegionsSummary- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Summary of binding regions, density of overlaps (creation of tables: 'summaryOfBindingRegions', 'densityOfBindingRegionOverlaps', 'chart_densityOfBindingRegionOverlaps')
Parameters:
- Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
- TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
- Path to output folder – Output folder will be created under this location
