Difference between revisions of "Create DAS track (analysis)"
From BioUML platform
(Plugin name added) |
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Create DAS track |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|biouml.plugins.das.CreateDASTrackAnalysis}} | ||
;Plugin | ;Plugin | ||
| − | :biouml.plugins.das (Support for DAS(Distributed Annotation System) protocol) | + | :[[Biouml.plugins.das (plugin)|biouml.plugins.das (Support for DAS(Distributed Annotation System) protocol)]] |
==== Description ==== | ==== Description ==== | ||
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* '''Genome''' – Attach to genome | * '''Genome''' – Attach to genome | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
| − | ** '''Sequence collection''' – | + | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected |
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ||
* '''Output path''' – Where to store output | * '''Output path''' – Where to store output | ||
Latest revision as of 18:07, 14 June 2013
- Analysis title
Create DAS track
- Provider
- Institute of Systems Biology
- Class
CreateDASTrackAnalysis- Plugin
- biouml.plugins.das (Support for DAS(Distributed Annotation System) protocol)
[edit] Description
Create DAS-server track and put into repository
[edit] Parameters:
- DAS server URL – Base URL of DAS server
- DAS source – Source name
- DAS type – Type of the track
- Genome – Attach to genome
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Genome ID string – Something like 'hg18' or 'mm6'
- Output path – Where to store output
