Difference between revisions of "Correlations of best sites (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| + | * '''Input track''' – Select input peaks track (must be the result of MACS or SISSRs analysis) | ||
* '''Sequences collection''' – Select a source of nucleotide sequences | * '''Sequences collection''' – Select a source of nucleotide sequences | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ||
| − | |||
* '''Is around summit''' – Is around summit | * '''Is around summit''' – Is around summit | ||
* '''Minimal region length''' – Minimal length of sequence region | * '''Minimal region length''' – Minimal length of sequence region | ||
Revision as of 18:39, 16 July 2013
- Analysis title
Correlations of best sites
- Provider
- Institute of Systems Biology
- Class
BestSiteCorrelations- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Best sites: correlation between best sites and characteristics of single chip-seq track; summit(yes/no)
Parameters:
- Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Is around summit – Is around summit
- Minimal region length – Minimal length of sequence region
- Matrix – Path to positional weight matrix
- Output table path – Path to the output table
