Difference between revisions of "Rbiouml"
From BioUML platform
Ivan Yevshin (Talk | contribs) (→Installation) |
Ivan Yevshin (Talk | contribs) (→Installation) |
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== Installation == | == Installation == | ||
| − | rbiouml depends on RCurl package that requires libcurl | + | rbiouml depends on RCurl package that requires libcurl library and header files. |
On ubuntu install libcurl4-gnutls-dev: | On ubuntu install libcurl4-gnutls-dev: | ||
sudo apt-get install libcurl4-gnutls-dev | sudo apt-get install libcurl4-gnutls-dev | ||
Revision as of 12:29, 19 September 2013
rbiouml is an R package which allows accessing BioUML server from R script. It's available on CRAN repository.
Main capabilities
- Retrieving
tables from BioUML (including any items which can be represented as tables: 
profiles, some kinds of 
tracks, etc.);
- Storing tables in BioUML;
- Listing items in BioUML repository;
- Launching BioUML analyses;
- Launching BioUML workflows.
Installation
rbiouml depends on RCurl package that requires libcurl library and header files. On ubuntu install libcurl4-gnutls-dev:
sudo apt-get install libcurl4-gnutls-dev
Use the following R command to install rbiouml:
install.packages("rbiouml")
To update from older version use:
update.packages("rbiouml")
