Difference between revisions of "Rbiouml"
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== Main capabilities == | == Main capabilities == | ||
| − | * Retrieving {{Type link|table}}s from BioUML (including any items which can be represented as tables: {{Type link|profile}}s, some kinds of {{Type link|track}}s, etc.) | + | * Retrieving {{Type link|table}}s from BioUML (including any items which can be represented as tables: {{Type link|profile}}s, some kinds of {{Type link|track}}s, etc.); |
| − | * Storing {{Type link|table}}s in BioUML | + | * Storing {{Type link|table}}s in BioUML; |
| − | * Listing items in BioUML repository | + | * Listing items in BioUML repository; |
| − | * Launching BioUML analyses | + | * Launching BioUML analyses; |
* Launching BioUML workflows. | * Launching BioUML workflows. | ||
== Installation == | == Installation == | ||
| + | '''rbiouml''' depends on RCurl package that requires libcurl library and header files. | ||
| + | On ubuntu install libcurl4-gnutls-dev: | ||
| + | sudo apt-get install libcurl4-gnutls-dev | ||
Use the following R command to install rbiouml: | Use the following R command to install rbiouml: | ||
install.packages("rbiouml") | install.packages("rbiouml") | ||
| Line 14: | Line 17: | ||
update.packages("rbiouml") | update.packages("rbiouml") | ||
| − | == | + | == External links == |
| − | * [http://cran.r-project.org/web/packages/rbiouml/ CRAN page] | + | * [http://cran.r-project.org/web/packages/rbiouml/ CRAN rbiouml page] |
* [http://cran.r-project.org/web/packages/rbiouml/vignettes/rbiouml.pdf Getting started with rbiouml] | * [http://cran.r-project.org/web/packages/rbiouml/vignettes/rbiouml.pdf Getting started with rbiouml] | ||
[[Category:R]] | [[Category:R]] | ||
Latest revision as of 12:30, 19 September 2013
rbiouml is an R package which allows accessing BioUML server from R script. It's available on CRAN repository.
[edit] Main capabilities
- Retrieving
tables from BioUML (including any items which can be represented as tables: 
profiles, some kinds of 
tracks, etc.);
- Storing tables in BioUML;
- Listing items in BioUML repository;
- Launching BioUML analyses;
- Launching BioUML workflows.
[edit] Installation
rbiouml depends on RCurl package that requires libcurl library and header files. On ubuntu install libcurl4-gnutls-dev:
sudo apt-get install libcurl4-gnutls-dev
Use the following R command to install rbiouml:
install.packages("rbiouml")
To update from older version use:
update.packages("rbiouml")
