Difference between revisions of "Correlations of best sites (analysis)"

Revision as of 16:17, 11 December 2014

Best sites: correlation between best sites and characteristics of single chip-seq track; summit(yes/no)

Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
Is around summit – Is around summit
Minimal region length – Minimal length of sequence region
Matrix – Path to positional weight matrix
Types of site models – Select site models for comparative analysis
Path to output folder – Output folder will be created under this location

@@ Line 13: / Line 13: @@
 ==== Parameters: ====
-* '''Input track''' – Select input peaks track (must be the result of MACS or SISSRs analysis)
+* '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
 * '''Sequences collection''' – Select a source of nucleotide sequences
 ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
@@ Line 20: / Line 20: @@
 * '''Minimal region length''' – Minimal length of sequence region
 * '''Matrix''' – Path to positional weight matrix
-* '''Output table path''' – Path to the output table
 * '''Types of site models''' – Select site models for comparative analysis
+* '''Path to output folder''' – Output folder will be created under this location
 [[Category:Analyses]]