Difference between revisions of "Biouml.plugins.ensembl (plugin)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
| − | :0.9. | + | :0.9.10 |
=== Analysis methods === | === Analysis methods === | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
| − | *[[Annotate track with genes (analysis)|Annotate track with genes]] | + | *[[File:BSA-Annotate-track-with-genes-icon.png]] [[Annotate track with genes (analysis)|Annotate track with genes]] |
| − | *[[Convert table via homology (analysis)|Convert table via homology]] | + | *[[File:Data-Convert-table-via-homology-icon.png]] [[Convert table via homology (analysis)|Convert table via homology]] |
| − | *[[Gene overlap statistics (analysis)|Gene overlap statistics]] | + | *[[File:Default-analysis-icon.png]] [[Gene overlap statistics (analysis)|Gene overlap statistics]] |
| − | *[[Mutation effect (analysis)|Mutation effect]] | + | *[[File:BSA-Get-transcripts-track-icon.png]] [[Get transcripts track (analysis)|Get transcripts track]] |
| − | *[[Site distribution (analysis)|Site distribution]] | + | *[[File:Default-analysis-icon.png]] [[Import ensembl homology (analysis)|Import ensembl homology]] |
| − | *[[Track to gene set (analysis)|Track to gene set]] | + | *[[File:BSA-Mutation-effect-icon.png]] [[Mutation effect (analysis)|Mutation effect]] |
| + | *[[File:BSA-Prepare-GTF-annotation-icon.png]] [[Prepare GTF annotation (analysis)|Prepare GTF annotation]] | ||
| + | *[[File:BSA-Read-counter-icon.png]] [[Read counter (analysis)|Read counter]] | ||
| + | *[[File:BSA-SNP-matching-icon.png]] [[SNP matching (analysis)|SNP matching]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Site distribution (analysis)|Site distribution]] | ||
| + | *[[File:BSA-Track-to-gene-set-icon.png]] [[Track to gene set (analysis)|Track to gene set]] | ||
| + | |||
| + | === Host objects === | ||
| + | JavaScript [[Host object (extension point)|host objects]] defined in this plugin: | ||
| + | *[[Ensembl (host object)|ensembl]] | ||
=== Reference types === | === Reference types === | ||
[[Reference type]]s defined in this plugin: | [[Reference type]]s defined in this plugin: | ||
| + | *[[File:ReferenceType-EnsemblGeneTableType-icon.png]] [[Genes - Ensembl|Genes: Ensembl]] | ||
| + | *[[File:ReferenceType-EntrezGeneTableType-icon.png]] [[Genes - Entrez|Genes: Entrez]] | ||
| + | *[[File:ReferenceType-GenBankGeneTableType-icon.png]] [[Genes - GenBank|Genes: GenBank]] | ||
| + | *[[File:ReferenceType-GeneSymbolTableType-icon.png]] [[Genes - Gene symbol|Genes: Gene symbol]] | ||
| + | *[[File:ReferenceType-UniGeneTableType-icon.png]] [[Genes - Unigene|Genes: Unigene]] | ||
*[[File:ReferenceType-AffymetrixProbeTableType-icon.png]] [[Probes - Affymetrix|Probes: Affymetrix]] | *[[File:ReferenceType-AffymetrixProbeTableType-icon.png]] [[Probes - Affymetrix|Probes: Affymetrix]] | ||
*[[File:ReferenceType-AgilentProbeTableType-icon.png]] [[Probes - Agilent|Probes: Agilent]] | *[[File:ReferenceType-AgilentProbeTableType-icon.png]] [[Probes - Agilent|Probes: Agilent]] | ||
*[[File:ReferenceType-IlluminaProbeTableType-icon.png]] [[Probes - Illumina|Probes: Illumina]] | *[[File:ReferenceType-IlluminaProbeTableType-icon.png]] [[Probes - Illumina|Probes: Illumina]] | ||
| − | |||
*[[File:ReferenceType-EnsemblProteinTableType-icon.png]] [[Proteins - Ensembl|Proteins: Ensembl]] | *[[File:ReferenceType-EnsemblProteinTableType-icon.png]] [[Proteins - Ensembl|Proteins: Ensembl]] | ||
| − | |||
| − | |||
| − | |||
*[[File:ReferenceType-GenBankProteinType-icon.png]] [[Proteins - GenBank|Proteins: GenBank]] | *[[File:ReferenceType-GenBankProteinType-icon.png]] [[Proteins - GenBank|Proteins: GenBank]] | ||
| − | |||
*[[File:ReferenceType-IPIProteinTableType-icon.png]] [[Proteins - IPI|Proteins: IPI]] | *[[File:ReferenceType-IPIProteinTableType-icon.png]] [[Proteins - IPI|Proteins: IPI]] | ||
| − | *[[File:ReferenceType- | + | *[[File:ReferenceType-NCBIProteinType-icon.png]] [[Proteins - NCBI|Proteins: NCBI]] |
*[[File:ReferenceType-RefSeqProteinTableType-icon.png]] [[Proteins - RefSeq|Proteins: RefSeq]] | *[[File:ReferenceType-RefSeqProteinTableType-icon.png]] [[Proteins - RefSeq|Proteins: RefSeq]] | ||
| − | |||
| − | |||
*[[File:ReferenceType-UniprotProteinTableType-icon.png]] [[Proteins - UniProt|Proteins: UniProt]] | *[[File:ReferenceType-UniprotProteinTableType-icon.png]] [[Proteins - UniProt|Proteins: UniProt]] | ||
| + | *[[File:ReferenceType-EnsemblTranscriptTableType-icon.png]] [[Transcripts - Ensembl|Transcripts: Ensembl]] | ||
| + | *[[File:ReferenceType-RefSeqTranscriptTableType-icon.png]] [[Transcripts - RefSeq|Transcripts: RefSeq]] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:ISB plugins]] | [[Category:ISB plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 16:35, 12 March 2019
- ID
- biouml.plugins.ensembl
- Name
- Support for Ensembl database and Ensembl-specific analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
[edit] Analysis methods
Analysis methods defined in this plugin:
Annotate track with genes
Convert table via homology
Gene overlap statistics
Get transcripts track
- Import ensembl homology
Mutation effect
Prepare GTF annotation
Read counter
SNP matching
- Site distribution
Track to gene set
[edit] Host objects
JavaScript host objects defined in this plugin:
[edit] Reference types
Reference types defined in this plugin:
