Difference between revisions of "Gene set to track (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Match-sites-and-genes-Gene-set-to-track-icon.png]] Gene set to track |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.GeneSetToTrack}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Convert gene set to track | + | Convert gene set to track. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 15: | Line 17: | ||
* '''From''' – From position (relative to gene start) | * '''From''' – From position (relative to gene start) | ||
* '''To''' – To position (relative to gene start) | * '''To''' – To position (relative to gene start) | ||
| + | * '''Close TSS handling''' (expert) – How to handle TSS located close to each other | ||
| + | * '''Leading column''' (expert) – Numeric column used to select one TSS from adjacent | ||
| + | * '''Minimal distance''' – Minimal distance between adjacent TSS | ||
* '''Output name''' – Output name | * '''Output name''' – Output name | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Match sites and genes (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Gene set to track
- Provider
- Institute of Systems Biology
- Class
GeneSetToTrack- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Convert gene set to track.
[edit] Parameters:
- Table – Table of source genes
- Species – Taxonomical species
- From – From position (relative to gene start)
- To – To position (relative to gene start)
- Close TSS handling (expert) – How to handle TSS located close to each other
- Leading column (expert) – Numeric column used to select one TSS from adjacent
- Minimal distance – Minimal distance between adjacent TSS
- Output name – Output name
