Difference between revisions of "Read counter (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:RNA-seq-Read-counter-icon.png]] Read counter |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
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==== Description ==== | ==== Description ==== | ||
| − | Count reads that overlap with specified genes and output a table with genes and respective read counts | + | Count reads that overlap with specified genes and output a table with genes and respective read counts. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:RNA-seq (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Read counter
- Provider
- Institute of Systems Biology
- Class
ReadCounter- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
[edit] Description
Count reads that overlap with specified genes and output a table with genes and respective read counts.
[edit] Parameters:
- Track with reads – Track with reads
- Genes – Table with genes to map reads
- Ensembl version – Ensembl version to take gene track from
- Output table – Output table with genes and read counts
