Difference between revisions of "BioUML user interface"

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(+See also: Perspective link)
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{{Stub}}
 
{{Stub}}
  
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In either version the platform has a [http://en.wikipedia.org/wiki/WIMP_(computing) WIMP] graphical user interface.
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In either version the platform has a [[wikipedia:WIMP (computing)|WIMP]] graphical user interface.
  
 
Both in the BioUML workbench and BioUML web edition the following areas can be found (see the figures):
 
Both in the BioUML workbench and BioUML web edition the following areas can be found (see the figures):
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D — the '''[[viewpart|viewparts area]]''', providing a number of options under the different tabs in a context-dependent manner.
 
D — the '''[[viewpart|viewparts area]]''', providing a number of options under the different tabs in a context-dependent manner.
  
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E — the '''general control panel''', the topmost bar showing a context-dependent set of icons for the available operations.
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E — the '''[[general control panel]]''', the topmost bar showing a context-dependent set of icons for the available operations.
  
 
F — the '''[[repository pane toolbar]]''' containing a set of icons for the available operations depending on the item selected in the tree structure of the navigation pane.
 
F — the '''[[repository pane toolbar]]''' containing a set of icons for the available operations depending on the item selected in the tree structure of the navigation pane.
  
 
==List of icons==
 
==List of icons==
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{{draft}}
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===Repository pane===
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====Tree actions (web edition)====
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{{Web tree actions}}
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====Database types====
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*[[File:PublicDB_icon.png]] Public database with read access
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*[[File:ProtectedDB_R_icon.png]] Protected database with read access enabled
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*[[File:PublicDB_R_icon.png]] Public database with read access, write access disabled
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*[[File:PublicDB_W_icon.png]] Public database with read access, write access enabled
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*[[File:PublicDB_RW_icon.png]] Public database with read and write access
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*[[File:LocalDB_icon.png]] Local database
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*[[File:RemoteDB_R_icon.png]] Remote protected read-only database (no access)
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*[[File:RemoteDB_RW_icon.png]] Remote protected read-and-write database (no access)
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====Element types====
 
{{Element types}}
 
{{Element types}}
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===Information box===
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*[[File:View_separately_icon.png]] View the information in a new window / browser tab
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*[[File:Edit_description_icon.png]] Edit the element description displayed in the '''Info''' tab (only for users' own files; fields highlighted in pink are editable)
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*[[File:Search_icon.png]] Launch search for the entered term in the selected database
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===Viewparts area===
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*[[File:Edit_description_icon.png]] Edit
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*[[File:WebAction-toolbar-save_document-icon.png]] Save
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*[[File:Add_element_icon.png]] Add a new element
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*[[File:Recalculate_doc_icon.png]] Recalculate the document
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*[[File:Search icon.png]] Start search
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*[[File:Discard_icon.png]] Discard changes / clear elements
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*[[File:Execute_icon.png]] Execute
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*[[File:Add2docpane_icon.png]] Add/ apply to the item in the document pane
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*[[File:Add2newdia_icon.png]] Add to a new diagram
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*[[File:Stop_icon.png]] Stop (the selected tasks)
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*[[File:Accept2viewparts_icon.png]] Accept the layout edited in the document pane to the viewparts area
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*[[File:WebAction-tree-remove_element-icon.png]] Remove
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*[[File:Add2clipboard_icon.png]] Add to clipboard
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*[[File:Insertin2dia_icon.png]] Insert into the diagram
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 +
===General control panel===
 +
====Toolbar actions (web edition)====
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{{Web toolbar actions}}
 +
  
 
==Basic operations==
 
==Basic operations==
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{{draft}}
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 +
For information about '''handling files''' within the repository pane [[Repository pane|see the page]].
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For information about working with '''tables''' in the [[document pane]] [[Table document|see the page]].
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For information about working with '''diagrams''' in the [[document pane]] [[Diagram document|see the page]].
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 +
 
  
 
==See also==
 
==See also==
 
*[[Perspective]]s
 
*[[Perspective]]s
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*[[Features]]
  
 
[[Category:User interface]]
 
[[Category:User interface]]

Latest revision as of 13:09, 19 June 2013

BioUML web edition interface.
BioUML workbench interface.
This page or section is a stub. Please add more information here!

In either version the platform has a WIMP graphical user interface.

Both in the BioUML workbench and BioUML web edition the following areas can be found (see the figures):

A — the tabbed repository pane, where you find a collection of Databases, the uploaded Data files and the available Analyses methods (under the corresponding tabs), organized in a hierarchical tree structure. Here you can also see a list of Users involved with the current project.

B — the document pane (aka main pane or workspace), which is the part of the window where contents of projects and databases are viewed and handled. There can be as many tabs in the pane as there are diagrams, workflows, tables etc. opened in the workbench at the moment.

C — the information box containing tabs for the property inspector, which displays information about the data file or analysis method selected in the navigation pane above, and the text search engine.

D — the viewparts area, providing a number of options under the different tabs in a context-dependent manner.

E — the general control panel, the topmost bar showing a context-dependent set of icons for the available operations.

F — the repository pane toolbar containing a set of icons for the available operations depending on the item selected in the tree structure of the navigation pane.

Contents

[edit] List of icons

[edit] Repository pane

[edit] Tree actions (web edition)

  • WebAction-tree-run workflow-icon.png Run workflow
  • WebAction-tree-open external url-icon.png Open external link
  • WebAction-tree-open diagram 2-icon.png Open diagram
  • WebAction-tree-open tree table-icon.png Open view
  • WebAction-tree-open genome browser-icon.png Open track
  • WebAction-tree-open sequence-icon.png Open sequence
  • WebAction-tree-open table-icon.png Open table
  • WebAction-tree-open text-icon.png Open text document
  • WebAction-tree-open optimization-icon.png Open optimization
  • WebAction-tree-open analysis-icon.png Open analysis
  • WebAction-tree-open script-icon.png Open script
  • WebAction-tree-open web-icon.png Open document
  • WebAction-tree-open image-icon.png Open image
  • WebAction-tree-open plot-icon.png Open plot
  • WebAction-tree-open structures-icon.png Open as table
  • WebAction-tree-download file-icon.png Download file
  • WebAction-tree-open chat-icon.png Start chat
  • WebAction-tree-open group chat-icon.png Group chat
  • WebAction-tree-open work-icon.png Edit work
  • WebAction-tree-expand-icon.png Expand/collapse
  • WebAction-tree-new element-icon.png New element
  • WebAction-tree-new script-icon.png New JS script
  • WebAction-tree-new r script-icon.png New R script
  • WebAction-tree-new workflow-icon.png New workflow
  • WebAction-tree-new diagram-icon.png New diagram
  • WebAction-tree-new work-icon.png New work
  • WebAction-tree-new folder-icon.png New folder
  • WebAction-tree-open new optimization-icon.png New optimization
  • WebAction-tree-view plot-icon.png View
  • WebAction-tree-import element-icon.png Import
  • WebAction-tree-export element-icon.png Export
  • WebAction-tree-save element as-icon.png Save a copy
  • WebAction-tree-save folder as-icon.png Copy folder
  • WebAction-tree-remove element-icon.png Remove
  • WebAction-tree-remove project-icon.png Remove project
  • WebAction-tree-find project-icon.png Find project

[edit] Database types

  • PublicDB icon.png Public database with read access
  • ProtectedDB R icon.png Protected database with read access enabled
  • PublicDB R icon.png Public database with read access, write access disabled
  • PublicDB W icon.png Public database with read access, write access enabled
  • PublicDB RW icon.png Public database with read and write access
  • LocalDB icon.png Local database
  • RemoteDB R icon.png Remote protected read-only database (no access)
  • RemoteDB RW icon.png Remote protected read-and-write database (no access)

[edit] Element types

[edit] Information box

  • View separately icon.png View the information in a new window / browser tab
  • Edit description icon.png Edit the element description displayed in the Info tab (only for users' own files; fields highlighted in pink are editable)
  • Search icon.png Launch search for the entered term in the selected database

[edit] Viewparts area

  • Edit description icon.png Edit
  • WebAction-toolbar-save document-icon.png Save
  • Add element icon.png Add a new element
  • Recalculate doc icon.png Recalculate the document
  • Search icon.png Start search
  • Discard icon.png Discard changes / clear elements
  • Execute icon.png Execute
  • Add2docpane icon.png Add/ apply to the item in the document pane
  • Add2newdia icon.png Add to a new diagram
  • Stop icon.png Stop (the selected tasks)
  • Accept2viewparts icon.png Accept the layout edited in the document pane to the viewparts area
  • WebAction-tree-remove element-icon.png Remove
  • Add2clipboard icon.png Add to clipboard
  • Insertin2dia icon.png Insert into the diagram

[edit] General control panel

[edit] Toolbar actions (web edition)

  • WebAction-toolbar-logout-icon.png Log-out
  • WebAction-toolbar-login-icon.png Log-in
  • WebAction-toolbar-home-icon.png Start page
  • WebAction-toolbar-home ge-icon.png Start page
  • WebAction-toolbar-toggle ui-icon.png Toggle UI mode
  • WebAction-toolbar-toggle repository-icon.png Toggle repository
  • WebAction-toolbar-account info-icon.png Account info
  • WebAction-toolbar-project properties-icon.png Project properties
  • WebAction-toolbar-help-icon.png Help
  • WebAction-toolbar-save document-icon.png Save document
  • WebAction-toolbar-save document as-icon.png Save a copy
  • WebAction-toolbar-revert-icon.png Revert to saved
  • WebAction-toolbar-export-icon.png Export
  • WebAction-toolbar-import document-icon.png Import
  • WebAction-toolbar-undo in-icon.png Undo in
  • WebAction-toolbar-redo in-icon.png Redo in
  • WebAction-toolbar-zoom out-icon.png Zoom out
  • WebAction-toolbar-zoom in-icon.png Zoom in
  • WebAction-toolbar-fit to screen-icon.png Fit to screen
  • WebAction-toolbar-run script-icon.png Run script
  • WebAction-toolbar-generate script-icon.png Generate script
  • WebAction-toolbar-set auto layout-icon.png Set auto layout
  • WebAction-toolbar-clear auto layout-icon.png Clear auto layout
  • WebAction-toolbar-edit view options-icon.png View options
  • WebAction-toolbar-semantic zoom out-icon.png Semantic zoom out
  • WebAction-toolbar-semantic zoom in-icon.png Semantic zoom in
  • WebAction-toolbar-semantic overview-icon.png Overview
  • WebAction-toolbar-semantic default-icon.png Default
  • WebAction-toolbar-semantic detailed-icon.png Detailed
  • WebAction-toolbar-page-backward-icon.png Page backward
  • WebAction-toolbar-page-forward-icon.png Page forward
  • WebAction-toolbar-open-as-track-icon.png Open as track
  • WebAction-toolbar-pf highlight-icon.png Highlight/dehighlight originally loaded nodes


[edit] Basic operations

For information about handling files within the repository pane see the page.

For information about working with tables in the document pane see the page.

For information about working with diagrams in the document pane see the page.


[edit] See also

Retrieved from "https://wiki.biouml.org/index.php?title=BioUML_user_interface&oldid=4605"
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