Difference between revisions of "SNPs in binding regions (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Input track''' – Select input | + | * '''Input track''' – Select input track (it has to contain the merged binding regions; it can be the result of <nowiki>'</nowiki>Merge binding regions for cell-lines<nowiki>'</nowiki> analysis) |
* '''SNP track''' – Track containing SNPs (sites must have <nowiki>'</nowiki>AltAllele<nowiki>'</nowiki> and <nowiki>'</nowiki>RefAllele<nowiki>'</nowiki> properties) | * '''SNP track''' – Track containing SNPs (sites must have <nowiki>'</nowiki>AltAllele<nowiki>'</nowiki> and <nowiki>'</nowiki>RefAllele<nowiki>'</nowiki> properties) | ||
* '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column) | * '''TF names table''' – TF names table (TF class as a row name and TF title in <nowiki>'</nowiki>tfName<nowiki>'</nowiki> column) | ||
Latest revision as of 16:17, 11 December 2014
- Analysis title
SNPs in binding regions
- Provider
- Institute of Systems Biology
- Class
SNPInBindingRegions- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
This analysis calculates SNPs in binding regions
[edit] Parameters:
- Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
- SNP track – Track containing SNPs (sites must have 'AltAllele' and 'RefAllele' properties)
- TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
- Output table path – Path to the output table
