Difference between revisions of "Add reactants (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Molecular-networks-Add-reactants-icon.png]] Add reactants |
;Provider | ;Provider | ||
:[[geneXplain GmbH]] | :[[geneXplain GmbH]] | ||
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==== Description ==== | ==== Description ==== | ||
| − | + | Results of '''effector/regulator search''', '''longest chains finder''' and results of other similar analyses contains only essential elements, so visualizations of such results, which are usually used as scaffold of the signalling paths, contains only necessary elements. But if one would like to model all the dynamics or all the fluxes, diagram which contains all reactants/products fro each reaction is needed. | |
| + | |||
| + | This analysis adds missing reactants/products to reactions of existing diagram. | ||
==== Parameters: ==== | ==== Parameters: ==== | ||
* '''Input diagram''' – Result of network visualization | * '''Input diagram''' – Result of network visualization | ||
| − | * '''Species''' – Species | + | * '''Species''' – Species to which analysis should be confined |
| − | * ''' | + | * '''Search collection''' – Collection containing reactions |
| + | * '''Custom search collection''' – Path to the custom search collection | ||
* '''Output diagram''' – Full path to the output | * '''Output diagram''' – Full path to the output | ||
Latest revision as of 16:33, 12 March 2019
- Analysis title
Add reactants
- Provider
- geneXplain GmbH
- Class
AddReactantsAnalysis- Plugin
- biouml.plugins.keynodes (Master regulator node analysis plugin)
[edit] Description
Results of effector/regulator search, longest chains finder and results of other similar analyses contains only essential elements, so visualizations of such results, which are usually used as scaffold of the signalling paths, contains only necessary elements. But if one would like to model all the dynamics or all the fluxes, diagram which contains all reactants/products fro each reaction is needed.
This analysis adds missing reactants/products to reactions of existing diagram.
[edit] Parameters:
- Input diagram – Result of network visualization
- Species – Species to which analysis should be confined
- Search collection – Collection containing reactions
- Custom search collection – Path to the custom search collection
- Output diagram – Full path to the output
