Difference between revisions of "Read counter (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
||
| (One intermediate revision by one user not shown) | |||
| Line 1: | Line 1: | ||
;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:RNA-seq-Read-counter-icon.png]] Read counter |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.ensembl.analysis.ReadCounter}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)]] |
==== Description ==== | ==== Description ==== | ||
| − | Count reads that overlap with specified genes and output a table with genes and respective read counts | + | Count reads that overlap with specified genes and output a table with genes and respective read counts. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 15: | Line 15: | ||
* '''Track with reads''' – Track with reads | * '''Track with reads''' – Track with reads | ||
* '''Genes''' – Table with genes to map reads | * '''Genes''' – Table with genes to map reads | ||
| − | * ''' | + | * '''Ensembl version''' – Ensembl version to take gene track from |
* '''Output table''' – Output table with genes and read counts | * '''Output table''' – Output table with genes and read counts | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:RNA-seq (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Read counter
- Provider
- Institute of Systems Biology
- Class
ReadCounter- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
[edit] Description
Count reads that overlap with specified genes and output a table with genes and respective read counts.
[edit] Parameters:
- Track with reads – Track with reads
- Genes – Table with genes to map reads
- Ensembl version – Ensembl version to take gene track from
- Output table – Output table with genes and read counts
