Difference between revisions of "Quality control metrics (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | Calculation of quality control metrics for assessing tracks from GTRD | + | Calculation of quality control metrics for assessing tracks from GTRD. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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* '''Path to folder with folders''' – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks) | * '''Path to folder with folders''' – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks) | ||
* '''Folders names''' – Select folders names | * '''Folders names''' – Select folders names | ||
| + | * '''Type of combined peaks''' – Type of combined peaks | ||
* '''Minimal length of peaks''' – All peaks that are shorter than this threshold will be prolongated | * '''Minimal length of peaks''' – All peaks that are shorter than this threshold will be prolongated | ||
* '''Maximal length of peaks''' – All peaks that are longer than this threshold will be truncated | * '''Maximal length of peaks''' – All peaks that are longer than this threshold will be truncated | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category:GTRD (analyses group)]] | + | [[Category:GTRD build (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Quality control metrics
- Provider
- Institute of Systems Biology
- Class
QualityControlMetrics- Plugin
- biouml.plugins.gtrd (GTRD)
[edit] Description
Calculation of quality control metrics for assessing tracks from GTRD.
[edit] Parameters:
- Species – Select a taxonomical species
- Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
- Folders names – Select folders names
- Type of combined peaks – Type of combined peaks
- Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
- Maximal length of peaks – All peaks that are longer than this threshold will be truncated
- FPCM threshold – FPCM threshold
- Do add auxiliary information – Do add auxiliary information (such as number of observed peaks without orphans)?
- Path to output folder – Path to output folder
