Difference between revisions of "Read counter (analysis)"
From BioUML platform
(Default analysis icon as separate file) |
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:BSA-Read-counter-icon.png]] Read counter |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
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==== Description ==== | ==== Description ==== | ||
| − | Count reads | + | Count reads that overlap with specified genes and output a table with genes and respective read counts |
==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * ''' | + | * '''Track with reads''' – Track with reads |
| − | * ''' | + | * '''Genes''' – Table with genes to map reads |
| − | * ''' | + | * '''Gene track''' – Track with gene locations |
| − | * ''' | + | * '''Output table''' – Output table with genes and read counts |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 18:59, 13 February 2017
- Analysis title
Read counter
- Provider
- Institute of Systems Biology
- Class
ReadCounter- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Count reads that overlap with specified genes and output a table with genes and respective read counts
Parameters:
- Track with reads – Track with reads
- Genes – Table with genes to map reads
- Gene track – Track with gene locations
- Output table – Output table with genes and read counts
