Difference between revisions of "BioUML development roadmap"

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(Plans for 2013-2014)
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For this purpose, please, use the [http://forum.biouml.org/ BioUML forum].
 
For this purpose, please, use the [http://forum.biouml.org/ BioUML forum].
  
===Plans for 2013-2014===
+
===Plans for 2014===
  
 
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|v. 0.9.7
 
|v. 0.9.7
 
|
 
|
 +
*Visual modelling and simulation
 +
**improved Java code generator for huge models
 +
**new diagram type for glycobiology
 
*Server  
 
*Server  
**grid version - pilot task manager integration with SGE via DRMAA virtualisation       
+
**cloud version support for Amazon EC2
**repository - packages for Red Hat and Debian
+
**integration with Galaxy ToolShed
**Puppet cookbooks for server updates
+
**integration with Galaxy CloudMan
*NGS
+
**BioUML node for cluster/cloud architecture
 +
**improved task manager
 +
**repository - packages for Debian and CentOS
 +
*NGS workflows
 
**miRNA  
 
**miRNA  
 
**ribo-seq
 
**ribo-seq
|2013, December
+
|2014, Q1
 
|-
 
|-
 
|v. 0.9.8
 
|v. 0.9.8
 +
|
 +
*Visual modelling and simulation
 +
**pharmML support
 +
**new diagram type and code generator for non linear mixed effect models
 +
mobile version (for web-browser)
 +
**web interface improvements diagrams - convenient for exchange and editing
 +
|2014, Q2
 +
|-
 +
|v. 0.9.9
 
|
 
|
 
*Web interface
 
*Web interface
 
**mobile version (for web-browser)  
 
**mobile version (for web-browser)  
 
**web interface improvements diagrams - convenient for exchange and editing  
 
**web interface improvements diagrams - convenient for exchange and editing  
|2014, Q1
+
|2014, Q3
 
|}
 
|}
 
</center>
 
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Revision as of 01:13, 24 January 2014

This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.

Plans for 2014

Release Description Date
v. 0.9.7
  • Visual modelling and simulation
    • improved Java code generator for huge models
    • new diagram type for glycobiology
  • Server
    • cloud version support for Amazon EC2
    • integration with Galaxy ToolShed
    • integration with Galaxy CloudMan
    • BioUML node for cluster/cloud architecture
    • improved task manager
    • repository - packages for Debian and CentOS
  • NGS workflows
    • miRNA
    • ribo-seq
2014, Q1
v. 0.9.8
  • Visual modelling and simulation
    • pharmML support
    • new diagram type and code generator for non linear mixed effect models

mobile version (for web-browser)

    • web interface improvements diagrams - convenient for exchange and editing
2014, Q2
v. 0.9.9
  • Web interface
    • mobile version (for web-browser)
    • web interface improvements diagrams - convenient for exchange and editing
2014, Q3

Other desired features

Component Features Priority
Core *Major refactoring: complex, macromolecule state, reaction
  • Parameters fitting - optimization process as a workflow
  • SED-ML as workflow
  • Save optimization results as the diagram state
  • SBGN-XML support
  • Implementation of OQL subset for access to databases via BioUML object model
moderate
Databases
  • KEGG support improvements:
  • Diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG)
  • Set up wizard
low
Misc.
  • SBRML support
  • Further integration with MATLAB
low

See also

Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox