Difference between revisions of "GenBank format"
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| + | ;File format title | ||
| + | :GenBank format (*.gb) | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
| + | |||
| + | ==== Description ==== | ||
The GenBank sequence format is a format for storing sequences and associated annotations. It shares a feature table vocabulary and format with the EMBL and DDJB formats. | The GenBank sequence format is a format for storing sequences and associated annotations. It shares a feature table vocabulary and format with the EMBL and DDJB formats. | ||
Revision as of 14:12, 7 May 2013
- File format title
- GenBank format (*.gb)
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
The GenBank sequence format is a format for storing sequences and associated annotations. It shares a feature table vocabulary and format with the EMBL and DDJB formats.
Example
LOCUS SCU49845 5028 bp DNA linear PLN 23-MAR-2010
DEFINITION Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p
(AXL2) and Rev7p (REV7) genes, complete cds.
ACCESSION U49845
VERSION U49845.1 GI:1293613
KEYWORDS .
SOURCE Saccharomyces cerevisiae (baker's yeast)
ORGANISM Saccharomyces cerevisiae
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
Saccharomyces.
REFERENCE 1 (bases 1 to 5028)
AUTHORS Roemer,T., Madden,K., Chang,J. and Snyder,M.
TITLE Selection of axial growth sites in yeast requires Axl2p, a novel
plasma membrane glycoprotein
JOURNAL Genes Dev. 10 (7), 777-793 (1996)
PUBMED 8846915
REFERENCE 2 (bases 1 to 5028)
AUTHORS Roemer,T.
TITLE Direct Submission
JOURNAL Submitted (22-FEB-1996) Biology, Yale University, New Haven, CT
06520, USA
FEATURES Location/Qualifiers
source 1..5028
/organism="Saccharomyces cerevisiae"
/mol_type="genomic DNA"
/db_xref="taxon:4932"
/chromosome="IX"
mRNA 1..>206
/product="TCP1-beta"
CDS 1..206
/codon_start=3
/product="TCP1-beta"
/protein_id="AAA98665.1"
/db_xref="GI:1293614"
/translation="SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEA
AEVLLRVDNIIRARPRTANRQHM"
gene 687..>3158
/gene="AXL2"
mRNA 687..>3158
/gene="AXL2"
/product="Axl2p"
CDS 687..3158
/gene="AXL2"
/note="plasma membrane glycoprotein"
/codon_start=1
/product="Axl2p"
/protein_id="AAA98666.1"
/db_xref="GI:1293615"
/translation="MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESF
TFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFN
VILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNE
VFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPE
TSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYV
YLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYG
DVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQ
DHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSA
NATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIA
CGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLN
NPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQ
SQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDS
YGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTK
HRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRL
VDFSNKSNVNVGQVKDIHGRIPEML"
gene complement(3300..>4037)
/gene="REV7"
mRNA complement(3300..>4037)
/gene="REV7"
/product="Rev7p"
CDS complement(3300..4037)
/gene="REV7"
/codon_start=1
/product="Rev7p"
/protein_id="AAA98667.1"
/db_xref="GI:1293616"
/translation="MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQ
FVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVD
KDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNR
RVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEK
LISGDDKILNGVYSQYEEGESIFGSLF"
ORIGIN
1 gatcctccat atacaacggt atctccacct caggtttaga tctcaacaac ggaaccattg
61 ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct
121 ctgcatctga agccgctgaa gttctactaa gggtggataa catcatccgt gcaagaccaa
181 gaaccgccaa tagacaacat atgtaacata tttaggatat acctcgaaaa taataaaccg
241 ccacactgtc attattataa ttagaaacag aacgcaaaaa ttatccacta tataattcaa
301 agacgcgaaa aaaaaagaac aacgcgtcat agaacttttg gcaattcgcg tcacaaataa
361 attttggcaa cttatgtttc ctcttcgagc agtactcgag ccctgtctca agaatgtaat
421 aatacccatc gtaggtatgg ttaaagatag catctccaca acctcaaagc tccttgccga
481 gagtcgccct cctttgtcga gtaattttca cttttcatat gagaacttat tttcttattc
541 tttactctca catcctgtag tgattgacac tgcaacagcc accatcacta gaagaacaga
601 acaattactt aatagaaaaa ttatatcttc ctcgaaacga tttcctgctt ccaacatcta
661 cgtatatcaa gaagcattca cttaccatga cacagcttca gatttcatta ttgctgacag
721 ctactatatc actactccat ctagtagtgg ccacgcccta tgaggcatat cctatcggaa
781 aacaataccc cccagtggca agagtcaatg aatcgtttac atttcaaatt tccaatgata
841 cctataaatc gtctgtagac aagacagctc aaataacata caattgcttc gacttaccga
901 gctggctttc gtttgactct agttctagaa cgttctcagg tgaaccttct tctgacttac
961 tatctgatgc gaacaccacg ttgtatttca atgtaatact cgagggtacg gactctgccg
1021 acagcacgtc tttgaacaat acataccaat ttgttgttac aaaccgtcca tccatctcgc
1081 tatcgtcaga tttcaatcta ttggcgttgt taaaaaacta tggttatact aacggcaaaa
1141 acgctctgaa actagatcct aatgaagtct tcaacgtgac ttttgaccgt tcaatgttca
1201 ctaacgaaga atccattgtg tcgtattacg gacgttctca gttgtataat gcgccgttac
1261 ccaattggct gttcttcgat tctggcgagt tgaagtttac tgggacggca ccggtgataa
1321 actcggcgat tgctccagaa acaagctaca gttttgtcat catcgctaca gacattgaag
1381 gattttctgc cgttgaggta gaattcgaat tagtcatcgg ggctcaccag ttaactacct
1441 ctattcaaaa tagtttgata atcaacgtta ctgacacagg taacgtttca tatgacttac
1501 ctctaaacta tgtttatctc gatgacgatc ctatttcttc tgataaattg ggttctataa
1561 acttattgga tgctccagac tgggtggcat tagataatgc taccatttcc gggtctgtcc
1621 cagatgaatt actcggtaag aactccaatc ctgccaattt ttctgtgtcc atttatgata
1681 cttatggtga tgtgatttat ttcaacttcg aagttgtctc cacaacggat ttgtttgcca
1741 ttagttctct tcccaatatt aacgctacaa ggggtgaatg gttctcctac tattttttgc
1801 cttctcagtt tacagactac gtgaatacaa acgtttcatt agagtttact aattcaagcc
1861 aagaccatga ctgggtgaaa ttccaatcat ctaatttaac attagctgga gaagtgccca
1921 agaatttcga caagctttca ttaggtttga aagcgaacca aggttcacaa tctcaagagc
1981 tatattttaa catcattggc atggattcaa agataactca ctcaaaccac agtgcgaatg
2041 caacgtccac aagaagttct caccactcca cctcaacaag ttcttacaca tcttctactt
2101 acactgcaaa aatttcttct acctccgctg ctgctacttc ttctgctcca gcagcgctgc
2161 cagcagccaa taaaacttca tctcacaata aaaaagcagt agcaattgcg tgcggtgttg
2221 ctatcccatt aggcgttatc ctagtagctc tcatttgctt cctaatattc tggagacgca
2281 gaagggaaaa tccagacgat gaaaacttac cgcatgctat tagtggacct gatttgaata
2341 atcctgcaaa taaaccaaat caagaaaacg ctacaccttt gaacaacccc tttgatgatg
2401 atgcttcctc gtacgatgat acttcaatag caagaagatt ggctgctttg aacactttga
2461 aattggataa ccactctgcc actgaatctg atatttccag cgtggatgaa aagagagatt
2521 ctctatcagg tatgaataca tacaatgatc agttccaatc ccaaagtaaa gaagaattat
2581 tagcaaaacc cccagtacag cctccagaga gcccgttctt tgacccacag aataggtctt
2641 cttctgtgta tatggatagt gaaccagcag taaataaatc ctggcgatat actggcaacc
2701 tgtcaccagt ctctgatatt gtcagagaca gttacggatc acaaaaaact gttgatacag
2761 aaaaactttt cgatttagaa gcaccagaga aggaaaaacg tacgtcaagg gatgtcacta
2821 tgtcttcact ggacccttgg aacagcaata ttagcccttc tcccgtaaga aaatcagtaa
2881 caccatcacc atataacgta acgaagcatc gtaaccgcca cttacaaaat attcaagact
2941 ctcaaagcgg taaaaacgga atcactccca caacaatgtc aacttcatct tctgacgatt
3001 ttgttccggt taaagatggt gaaaattttt gctgggtcca tagcatggaa ccagacagaa
3061 gaccaagtaa gaaaaggtta gtagattttt caaataagag taatgtcaat gttggtcaag
3121 ttaaggacat tcacggacgc atcccagaaa tgctgtgatt atacgcaacg atattttgct
3181 taattttatt ttcctgtttt attttttatt agtggtttac agatacccta tattttattt
3241 agtttttata cttagagaca tttaatttta attccattct tcaaatttca tttttgcact
3301 taaaacaaag atccaaaaat gctctcgccc tcttcatatt gagaatacac tccattcaaa
3361 attttgtcgt caccgctgat taatttttca ctaaactgat gaataatcaa aggccccacg
3421 tcagaaccga ctaaagaagt gagttttatt ttaggaggtt gaaaaccatt attgtctggt
3481 aaattttcat cttcttgaca tttaacccag tttgaatccc tttcaatttc tgctttttcc
3541 tccaaactat cgaccctcct gtttctgtcc aacttatgtc ctagttccaa ttcgatcgca
3601 ttaataactg cttcaaatgt tattgtgtca tcgttgactt taggtaattt ctccaaatgc
3661 ataatcaaac tatttaagga agatcggaat tcgtcgaaca cttcagtttc cgtaatgatc
3721 tgatcgtctt tatccacatg ttgtaattca ctaaaatcta aaacgtattt ttcaatgcat
3781 aaatcgttct ttttattaat aatgcagatg gaaaatctgt aaacgtgcgt taatttagaa
3841 agaacatcca gtataagttc ttctatatag tcaattaaag caggatgcct attaatggga
3901 acgaactgcg gcaagttgaa tgactggtaa gtagtgtagt cgaatgactg aggtgggtat
3961 acatttctat aaaataaaat caaattaatg tagcatttta agtataccct cagccacttc
4021 tctacccatc tattcataaa gctgacgcaa cgattactat tttttttttc ttcttggatc
4081 tcagtcgtcg caaaaacgta taccttcttt ttccgacctt ttttttagct ttctggaaaa
4141 gtttatatta gttaaacagg gtctagtctt agtgtgaaag ctagtggttt cgattgactg
4201 atattaagaa agtggaaatt aaattagtag tgtagacgta tatgcatatg tatttctcgc
4261 ctgtttatgt ttctacgtac ttttgattta tagcaagggg aaaagaaata catactattt
4321 tttggtaaag gtgaaagcat aatgtaaaag ctagaataaa atggacgaaa taaagagagg
4381 cttagttcat cttttttcca aaaagcaccc aatgataata actaaaatga aaaggatttg
4441 ccatctgtca gcaacatcag ttgtgtgagc aataataaaa tcatcacctc cgttgccttt
4501 agcgcgtttg tcgtttgtat cttccgtaat tttagtctta tcaatgggaa tcataaattt
4561 tccaatgaat tagcaatttc gtccaattct ttttgagctt cttcatattt gctttggaat
4621 tcttcgcact tcttttccca ttcatctctt tcttcttcca aagcaacgat ccttctaccc
4681 atttgctcag agttcaaatc ggcctctttc agtttatcca ttgcttcctt cagtttggct
4741 tcactgtctt ctagctgttg ttctagatcc tggtttttct tggtgtagtt ctcattatta
4801 gatctcaagt tattggagtc ttcagccaat tgctttgtat cagacaattg actctctaac
4861 ttctccactt cactgtcgag ttgctcgttt ttagcggaca aagatttaat ctcgttttct
4921 ttttcagtgt tagattgctc taattctttg agctgttctc tcagctcctc atatttttct
4981 tgccatgact cagattctaa ttttaagcta ttcaatttct ctttgatc
//
