Difference between revisions of "Read counter (analysis)"
From BioUML platform
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.ensembl.analysis.ReadCounter}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)]] |
==== Description ==== | ==== Description ==== | ||
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* '''Track with reads''' – Track with reads | * '''Track with reads''' – Track with reads | ||
* '''Genes''' – Table with genes to map reads | * '''Genes''' – Table with genes to map reads | ||
| − | * ''' | + | * '''Ensembl version''' – Ensembl version to take gene track from |
* '''Output table''' – Output table with genes and read counts | * '''Output table''' – Output table with genes and read counts | ||
Revision as of 16:31, 12 March 2019
- Analysis title
Read counter
- Provider
- Institute of Systems Biology
- Class
ReadCounter- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
Description
Count reads that overlap with specified genes and output a table with genes and respective read counts
Parameters:
- Track with reads – Track with reads
- Genes – Table with genes to map reads
- Ensembl version – Ensembl version to take gene track from
- Output table – Output table with genes and read counts
