Difference between revisions of "Quality control metrics (analysis)"

Revision as of 16:33, 12 March 2019

Analysis title

Quality control metrics

Provider

Institute of Systems Biology

Class

QualityControlMetrics

Plugin

biouml.plugins.gtrd (GTRD)

Description

Calculation of quality control metrics for assessing tracks from GTRD

Parameters:

• Species – Select a taxonomical species
• Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
• Folders names – Select folders names
• Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
• Maximal length of peaks – All peaks that are longer than this threshold will be truncated
• FPCM threshold – FPCM threshold
• Do add auxiliary information – Do add auxiliary information (such as number of observed peaks without orphans)?
• Path to output folder – Path to output folder