Difference between revisions of "Systems biology - model simulation"
From BioUML platform
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<ol> | <ol> | ||
<li> Go to the '''Simulation''' tab in the right bottom panel. Depending on the type of your diagram, the appropriate simulation engine will be set in the '''Selected engine''' field. For example, '''ODE Simulation Engine''' is used for ordinary differential equation models. For more information on supported simulation engines, see the [[Simulation]] section. | <li> Go to the '''Simulation''' tab in the right bottom panel. Depending on the type of your diagram, the appropriate simulation engine will be set in the '''Selected engine''' field. For example, '''ODE Simulation Engine''' is used for ordinary differential equation models. For more information on supported simulation engines, see the [[Simulation]] section. | ||
| − | <li> | + | <li> Select one of the available simulators (or use the default one): |
| + | *[[Euler]] | ||
| + | *[[Dormand-Prince]] | ||
| + | *[[Imex]] | ||
| + | *[[Descrete]] | ||
| + | *[[RADAU V|Radau V]] | ||
| + | *[[JVODE|JVode]] (default) | ||
<li> | <li> | ||
</ol> | </ol> | ||
Revision as of 10:49, 14 March 2022
To simulate SBML model, do the following (Figure 1):
- Go to the Simulation tab in the right bottom panel. Depending on the type of your diagram, the appropriate simulation engine will be set in the Selected engine field. For example, ODE Simulation Engine is used for ordinary differential equation models. For more information on supported simulation engines, see the Simulation section.
- Select one of the available simulators (or use the default one):
