Difference between revisions of "SNP matching (analysis)"
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| + | ;Analysis title | ||
| + | :SNP matching | ||
| + | ;Provider | ||
| + | :[[Institute of Systems Biology]] | ||
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| + | ==== Description ==== | ||
Converts given list of SNPs to track and matches them to the genes. User should supply table where row identifiers are SNP names like <nowiki>'</nowiki>rs11111111<nowiki>'</nowiki> | Converts given list of SNPs to track and matches them to the genes. User should supply table where row identifiers are SNP names like <nowiki>'</nowiki>rs11111111<nowiki>'</nowiki> | ||
Revision as of 15:40, 18 April 2013
- Analysis title
- SNP matching
- Provider
- Institute of Systems Biology
Description
Converts given list of SNPs to track and matches them to the genes. User should supply table where row identifiers are SNP names like 'rs11111111'
Parameters:
- Table – Table of source genes
- Species – Taxonomical species
- 5' region size – Include 5' region (promoter) of given size in bp
- 3' region size – Include 3' region of given size in bp
- Output non-matched – Whether to include in output table and track SNP's which were not matched to any gene
- Column to copy – Name of additional column to be copied to created genes table
- Aggregator – Operation to perform on column values if several SNP's matched to single gene ('minimum','maximum','sum','average')
- Output track – Path to output track
- Output SNP table – Path to output table with additional annotation
- Output genes table – Path to output table containing all the genes matched to SNPs
