Difference between revisions of "SNP matching (analysis)"

Revision as of 11:14, 31 May 2013

Converts given list of SNPs to track and matches them to the genes. User should supply table where row identifiers are SNP names like 'rs11111111'

Table – Table of source genes
Species – Taxonomical species
5' region size – Include 5' region (promoter) of given size in bp
3' region size – Include 3' region of given size in bp
Output non-matched – Whether to include in output table and track SNP's which were not matched to any gene
Column to copy – Name of additional column to be copied to created genes table
Aggregator – Operation to perform on column values if several SNP's matched to single gene ('minimum','maximum','sum','average')
Output track – Path to output track
Output SNP table – Path to output table with additional annotation
Output genes table – Path to output table containing all the genes matched to SNPs

@@ Line 3: / Line 3: @@
 ;Provider
 :[[Institute of Systems Biology]]
+;Class
+:{{Class|ru.biosoft.bsa.snp.SNPListToTrack}}
 ;Plugin
 :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]