Difference between revisions of "Fold-Change calculation (analysis)"

Revision as of 15:25, 4 April 2013

Calculates fold-change values

Parameters:

• Experiment – Table with experimental(test) data
  • Table – Table path
  • Columns – List of columns to use
• Control – Table with control data
  • Table – Table path
  • Columns – List of columns to use
• Data handling – Type of fold-change: average none, average control, average experiment, average all and one to one
• Input logarithm base – Logarithm base of input data
• Result logarithm base – Logarithm base of result
• Value boundaries (expert) – All values outside these boundaries will be treated as outliers
  • Lower boundary – Input values below this threshold will be ignored
  • Upper boundary – Input values above this threshold will be ignored
• Output table – Output table
• Output histogram – If specified, histogram will be created showing fold-change distribution