Difference between revisions of "Binding regions summary (analysis)"

Revision as of 17:16, 6 June 2013

Analysis title

File:Binding-regions-Binding-regions-summary-icon.png Binding regions summary

Provider

Institute of Systems Biology

Class

BindingRegionsSummary

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Summary of binding regions, density of overlaps (creation of tables: 'summaryOfBindingRegions', 'densityOfBindingRegionOverlaps', 'chart_densityOfBindingRegionOverlaps')

Parameters:

• Input track – Select input ChIP-seq track (must be the result of the result of 'Merge binding regions for cell-lines' analysis)
• TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
• Path to output folder – Output folder will be created under this location