Difference between revisions of "GTRD"
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==Database statistics== | ==Database statistics== | ||
GTRD uses 2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors. | GTRD uses 2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors. | ||
| − | [[File:gtrd_exp_by_specie.png | + | [[File:gtrd_exp_by_specie.png|ChIP-seq experiments by species]] |
Most of ChIP-seq experiments (1638) have corresponding control experiment. | Most of ChIP-seq experiments (1638) have corresponding control experiment. | ||
[[File:gtrd_exp_control.png|thumb|Control experiments]] | [[File:gtrd_exp_control.png|thumb|Control experiments]] | ||
Revision as of 17:37, 1 July 2013
GTRD (Gene Transcription Regulation Database) is a database of transcription factor binding sites identified from ChIP-seq experiments. GTRD identifies binding sites from ChIP-seq experiments available from literature, GEO, SRA and ENCODE databases.
The web interface to GTRD is freely available at http://192.168.199.241/bioumlweb/#anonymous=true&perspective=GTRD.
Database statistics
GTRD uses 2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors.
Most of ChIP-seq experiments (1638) have corresponding control experiment.
