Difference between revisions of "Search binding sites (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
Revision as of 13:57, 19 August 2013
- Analysis title
Search binding sites
- Provider
- Institute of Systems Biology
- Class
SearchBindingSites- Plugin
- biouml.plugins.gtrd (GTRD)
Description
Search binding sites
Parameters:
- preparedData (expert) – preparedData
- Organism – Organism
- Gene symbol or ID – Restrict search to single gene, enter 'Any' to search in all genes
- Transcription factor – Transcription factor
- ChIP-seq peak calling method – ChIP-seq peak calling method
- Cell line – Cell line
- Treatment – Treatment/condition
- Max gene distance – Maximal distance from site to gene
- Binding sites (expert) – Found transcription factor binding sites
