Difference between revisions of "ROC-curves in grouped peaks (analysis)"

Revision as of 16:17, 11 December 2014

ROC-curves: To sort and to group (by ChIP-Seq characteristics) peaks from one track; summit(yes/no)

Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
Is around summit – Is around summit
Minimal region length – Minimal length of sequence region
Number of groups – How many groups will be created
Types of site models – Select site models for comparative analysis
Matrix – Path to positional weight matrix
Path to output folder – Output folder will be created under this location