Difference between revisions of "Find regulatory regions (analysis)"

Revision as of 16:33, 12 March 2019

Analysis title

Find regulatory regions

Provider

Biosoft

Class

FindRegulatoryRegions

Plugin

biouml.plugins.genomeenhancer (Genome Enhancer)

Parameters:

• Input genes – Input genes
• ChIP-seq peaks – ChIP-seq peaks
• Ensembl database – Ensembl database
• CAGE TSS database – Select type of database to extract TSSs
• Cell/Tissue condition – Cell/Tissue condition
• TSS selection – Selection of TSS if multiple TSSs are known
• Promoter from – Promoter from
• Promoter to – Promoter to
• Shift of left gene bound position (expert) – Shift of left gene bound position
• Shift of right gene bound position (expert) – Shift of right gene bound position
• Regulatory region from (expert) – Regulatory region from
• Regulatory region to (expert) – Regulatory region to
• Output path – Path for the output track