Difference between revisions of "MicroRNA aligner (analysis)"

Latest revision as of 18:15, 9 December 2020

Aligns NGS reads to microRNA.

Source – Whether to get input data from track or from FASTQ
Input track – Track to process
FASTQ file – FASTQ file with reads to analyze
Quality encoding – This specifies how phred quality values are encoded in the FASTQ file. In most of the cases system detects this value automatically. You may change it manually if auto-detection worked incorrectly.
CSFasta file – File containing reads in color space
Qual file – File containing corresponding quality values
miRNASequences – miRNASequences
adapter – adapter
matchScore – matchScore
mismatchPenalty – mismatchPenalty
gapPenalty – gapPenalty
alignmentScoreThreshold – alignmentScoreThreshold
threadCount – threadCount
autoGeneratedQueryNames – autoGeneratedQueryNames
unmapped – unmapped
results – results

@@ Line 4: / Line 4: @@
 :[[Institute of Systems Biology]]
 ;Class
-:{{Class|ru.biosoft.bsa.analysis.MicroRNAAligner}}
+:{{Class|ru.biosoft.bsastats.MicroRNAAligner}}
 ;Plugin
-:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
+:[[Ru.biosoft.bsastats (plugin)|ru.biosoft.bsastats (Bio-sequences analyses plugin extension)]]
 ==== Description ====
-Aligns NGS reads to microRNA
+Aligns NGS reads to microRNA.
 ==== Parameters: ====
@@ Line 31: / Line 31: @@
 [[Category:Analyses]]
-[[Category:BSA (analyses group)]]
+[[Category:MicroRNA (analyses group)]]
 [[Category:ISB analyses]]
 [[Category:Autogenerated pages]]