Search regulated genes (analysis)
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Revision as of 18:14, 9 December 2020 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Search regulated genes
- Provider
- Institute of Systems Biology
- Class
SearchRegulatedGenes- Plugin
- biouml.plugins.gtrd (GTRD)
Description
Search for genes potentially regulated by the given transcription factor(TF). The gene will be considered as potentially regulated by the given TF if the TF binds near the gene.
Parameters:
- preparedTables (expert) – preparedTables
- peaksFolder (expert) – peaksFolder
- Organism – Organism
- Transcription factor – Transcription factor
- Data set – Data set
- Cell line – Cell line
- Treatment – Treatment/condition
- Max gene distance – Maximal distance from site to gene
- Regulated genes (expert) – Found genes regulated by transcription factor
