Mutation effect on sites (analysis)
From BioUML platform
Revision as of 16:16, 11 December 2014 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Mutation effect on sites
- Provider
- Institute of Systems Biology
- Class
MutationEffectOnSites- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Find transcription factor binsing sites affected by mutations
Parameters:
- Input VCF track – Input track in VCF format
- Genome – Reference genome
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Profile – Predefined set of site models
- Score difference – Minimal site score difference between reference and alternative sequences
- Output track – Track with affected sites
