Biouml.plugins.ensembl (plugin)

ID

biouml.plugins.ensembl

Name

Support for Ensembl database and Ensembl-specific analyses

Provider

Institute of Systems Biology

Version

0.9.9

Analysis methods

Analysis methods defined in this plugin:

• Annotate track with genes
• Convert table via homology
• Count reads in transcripts
• Gene overlap statistics
• Mutation effect
• Prepare GTF annotation
• Site distribution
• Track to gene set

Host objects

JavaScript host objects defined in this plugin:

• ensembl

Reference types

Reference types defined in this plugin:

• Genes: Ensembl
• Genes: Entrez
• Genes: GenBank
• Genes: Gene symbol
• Genes: RefSeq
• Genes: Unigene
• Probes: Affymetrix
• Probes: Agilent
• Probes: Illumina
• Proteins: Ensembl
• Proteins: GenBank
• Proteins: IPI
• Proteins: NCBI
• Proteins: RefSeq
• Proteins: UniProt
• Transcripts: Ensembl
• Transcripts: RefSeq