Create database from diagram (analysis)

Analysis title

Create database from diagram

Provider

Institute of Systems Biology

Class

DiagramToDatabase

Plugin

biouml.plugins.metabolics (Metabolics Analysis)

Description

Create database from diagram

Parameters:

• Diagram – Path to the diagram you want to convert to the database
• ID extractor – An algorithm which matches diagram IDs (diagram-specific)
• Species – Species
• Use threshold for stop-molecules – Uncheck to specify stop-molecules list explicitly
• Stop-molecule threshold – If molecule participates in more reactions than specified it will be marked as stop-molecule
• Stop molecules list – Path to the table containing stop-molecules IDs
• Stop-reaction threshold – If reaction has more reactants or products than the specified number, it will be marked as ignored
• Database name – The name of the newly-created database