Transcriptome minimal unique length (analysis)

Analysis title

Transcriptome minimal unique length

Provider

Institute of Systems Biology

Class

TranscriptomeMinimalUniqueLength

Plugin

biouml.plugins.riboseq (RiboSeq Experiment)

Description

For each position in transcript find the shortest possible read length that can map uniquely to this position.

Parameters:

• Transcript set – Transcript set
  • Annotation source – Source of gene annotation
  • Transcripts annotation track – Track with transcripts annotation in BED format
  • Genome sequence – Collection of chromosomal sequences
  • Ensembl – Ensembl database version
  • Transcript subset – Subset of transcripts used in this analysis
  • GTF file – GTF file
• Only protein coding – Use only protein coding transcripts
• Result path – Path to store result