Import HOCOMOCO (analysis)

Analysis title

Import HOCOMOCO

Provider

Institute of Systems Biology

Class

ImportHocomoco

Plugin

biouml.plugins.gtrd (GTRD)

Description

Imports HOCOMOCO database from flat files.

Parameters:

• PCM flat file – Position count matrix flat file
• PWM flat file – Position weight matrix flat file
• Thresholds table – Table with model thresholds
• Thresholds folder – Thresholds folder
• Uniprot matching table – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
• Resulting matrix collection – Path to resulting matrix collection
• Resulitng site model collection – Path to resulting site model collection
• Resulting factor collection – Resulting factor collection