Bioumlsim

bioumlsim is a Python library providing API for BioUML simulation capabilities. Python 3.6. is required!

Source code is avaliable at github and PYPI.

It can be installed via pip:

pip insall bioumlsim

All neccessary Java libraries are already embedded into library and are downloaded along with python code.

Demo python code:

import bioumlsim
bsim = bioumlsim.Bioumlsim()     #Here JVM is starting
model = bsim.loadTest()          #To load your own model replace it with "model = bsim.load(PATH_TO_SBML)"
result = model.simulate(100,10)  #first argument: completion time, second argument: number of time points
bsim.plot(result)                #plot simulation result