SNP regions in genome (analysis)
From BioUML platform
- Analysis title
SNP regions in genome
- Provider
- Institute of Systems Biology
- Class
SNPRegionsInGenome- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
This analysis finds SNP regions in genome
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- SNP track – Track containing SNPs (sites must have 'AltAllele' and 'RefAllele' properties)
- SNP region length – Length of each reference region
- Output table path – Path to the output table
