EMBL format
From BioUML platform
- File format title
- EMBL format (*.embl)
- Element type
collection of sequences
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
EMBL sequence format
The EMBL flat format is a format for storing sequences and their associated meta-information, feature coordinates, and annotations.
One sequence entry starts with an identifier line ("ID"), followed by further annotation lines. The start of the sequence is marked by a line starting with "SQ" and the end of the sequence is marked by two slashes ("//").
Example
ID ADHBADA2 standard; DNA; VRT; 1145 BP.
XX
AC J00923; J00924;
XX
DT 13-JUN-1985 (Rel. 06, Created)
DT 22-NOV-1994 (Rel. 41, Last updated, Version 2)
XX
DE Duck alpha-A-globin gene and 5' flank.
XX
KW alpha-globin; globin.
XX
OS Cairina moschata (duck)
OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
OC Neornithes; Neognathae; Anseriformes; Anatidae.
XX
RN [1]
RP 603-696
RX MEDLINE; 83028533.
RA Niessing J., Erbil C., Neubauer V.;
RT "The isolation and partial characterization of linked alpha-A- and
RT alpha-D-globin genes from a duck DNA recombinant library";
RL Gene 18:187-191(1982).
XX
RN [2]
RP 1-1145
RX MEDLINE; 83158759.
RA Erbil C., Niessing J.;
RT "The complete nucleotide sequence of the duck alpha-A-globin
RT gene";
RL Gene 20:211-217(1982).
XX
DR EPD; 33033; Cm a'A-globin.
DR SWISS-PROT; P01987; HBA_CAIMO.
XX
CC The alpha-A-globin gene is linked to the alpha-D-globin gene. [1]
CC compared their alpha-A-globin gene sequence with chicken alpha-A-
CC and alpha-S-globin gene sequences, as well as with other avian and
CC mammalian alpha-A-globin gene sequences. NCBI gi: 212911
XX
FH Key Location/Qualifiers
FH
FT source 1..1145
FT /organism="Cairina moschata"
FT prim_transcript 331..1145
FT /note="alpha-A-globin mRNA"
FT CDS join(367..461,612..816,921..1049)
FT /note="alpha-A globin; NCBI gi: 212914"
FT /codon_start=1
FT exon 367..461
FT /note="alpha-A globin"
FT /number=1
FT intron 462..611
FT /note="alpha-A-globin intron A"
FT exon 612..816
FT /number=2
FT intron 817..920
FT /note="alpha-A-globin intron B"
FT exon 921..>1049
FT /note="alpha-A globin"
FT /number=3
XX
SQ Sequence 1145 BP; 193 A; 435 C; 291 G; 226 T; 0 other;
ctcatgctgg ggttgcctcc ccccctcaaa ccctaacctt aatcccatct cgtgctgggg 60
tcagaccccc ctaaccctaa cccagttcat gccgggatca gcccccccaa accctaaccc 120
taaacccatc tcgtgccggg gtcagacccc ccccaaccct aaccccgacc ccagttcatg 180
ccggggtcgc ccccccccgg tggtgccggt gccgcaggcg gggcagggcg gcggccccgc 240
ctggccgagg tccagccgcg acggggcggg cggggcgggg cggcgcccgg gccggcacgg 300
ggatataagg ccggcggcac cagtgggggc acccgtgctg ggggctgcca acgcggagct 360
gcaaccatgg tgctgtctgc ggctgacaag accaacgtca agggtgtctt ctccaaaatc 420
ggtggccatg ctgaggagta tggcgccgag accctggaga ggtaggtgtc tgtccccgtc 480
ctttgtccgt ccctgatcct ctcctctcta accccatgct ctcccccacc ataactgtcc 540
gtgtcctacc ccaccccatc catcccccct gtccgttgat cccgctggcc ctgactcgct 600
ctgctccaca ggatgttcat cgcctacccc cagaccaaga cctacttccc ccactttgac 660
ctgcagcacg gctctgctca gatcaaggcc catggcaaga aggtggcggc tgccctagtt 720
gaagctgtca accacatcga tgacattgcg ggtgctctct ccaagctcag tgacctccac 780
gcccaaaagc tccgtgtgga ccctgtcaac ttcaaagtga gtctggtgac tccccccagc 840
tcctcttcag cacccatcct gggccatccg gccacccctt tacctccccc actcgctcac 900
cgtctccttt tgcctttcag ttcctgggcc actgcttcct ggtggtggtt gccatccacc 960
accccgctgc cctgacccca gaggtccacg cttccctgga caagttcatg tgcgccgtgg 1020
gtgctgtgct gactgccaag taccgttaga cggcaccgtg gctagagctg gacccaccct 1080
gttgccagcc ttccaactgc aagcagccaa atgatctgaa ataaaatctg ttgcatttgt 1140
gctcc 1145
//
