Make GTF for riboseq alignment (analysis)
From BioUML platform
- Analysis title
- Make GTF for riboseq alignment
- Provider
- Institute of Systems Biology
- Class
GTFForRiboseqAlignment
- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
Creates GTF file from Ensembl database, suitable for riboseq alignment.
Parameters:
- Transcript set – Set of transcripts to output into GTF file
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Min UTR length – Extend untranlsated regions to this length
- Only protein coding – Use only protein coding transcripts
- Resulting GTF – Resulting GTF file