Matrix comparison (analysis)

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Analysis title
Default-analysis-icon.png Matrix comparison
Provider
Institute of Systems Biology
Class
MatrixComparison
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Comparison of matrices by given site model type

Parameters:

  • Type of site model – Select type of site model that will be used for matrix derivation
  • Window size – Window size
  • Path to table with sequence sample – Select path to table with sequence sample
  • Name of table column with sequence sample – Select name of table column with sequence sample
  • Are both strands? – Do analize both strands of sequences? (if 'no', then only strand (+) will be analyzed)
  • % of best sites – Best sites percentage
  • Are also all matrices – Would you like to consider also all matrices simultaneously?
  • Paths to matrices – Paths to matrices
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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