Microarray (host object)

Host object name

microarray

Class

JavaScriptAnalysis

Plugin

ru.biosoft.analysis (Common methods of data analysis plug-in)

JavaScript host object

ScriptableObject microarray

Facade for data-manipulations

Functions:

• TableDataCollection cluster(TableDataCollection experiment, String columns, String method, int clusterCount, String outputTablePath)
• TableDataCollection correlation(TableDataCollection experiment, TableDataCollection control, String experimentColumns, String controlColumns, String dataSource, String resultType, String correlationType, double cutoff, double thresholdDown, double thresholdUp, boolean fdr, String outputTablePath)
• TableDataCollection crc(TableDataCollection experiment, String columns, double cutoff, int chainsCount, int cycleCount, boolean invert, double outputTablePath)
• TableDataCollection foldchange(TableDataCollection experiment, TableDataCollection control, String experimentColumns, String controlColumns, String type, String logarithmBase, String thresholdDown, double thresholdUp, double outputTablePath)
• TableDataCollection hypergeom(TableDataCollection experiment[, TableDataCollection control], String experimentColumns[, String controlColumns], String outputType, String pvalue, double thresholdDown, double thresholdUp, double bv, double fdr, boolean isControlAveraged, boolean isDetailed[, boolean matchingCollection][, DataCollection keySource], String outputTablePath)
• TableDataCollection regression(TableDataCollection experiment, String experimentColumns, String timePoints, int regressionPower, double pvalue, double thresholdDown, double thresholdUp, boolean fdr, String outputTablePath)
• TableDataCollection updown(TableDataCollection experiment, TableDataCollection control, String experimentColumns, String controlColumns, String method, String outputType, String pvalue, double thresholdDown, double thresholdUp, double fdr, boolean outputTablePath)
• void venn(TableDataCollection table1, TableDataCollection table2, TableDataCollection table3, boolean simple, String outputPath)