RNA-Seq analysis
From BioUML platform
- Analysis title
RNA-Seq analysis
- Provider
- Institute of Systems Biology
- Class
RnaSeqAnalysis- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Analysis of RNA-Seq data. Correspondence between expression levels and GTRD ChIP-Seq peaks
Parameters:
- Option – Please, select option (i.e. select the concrete session of given analysis).
- Parameters for OPTION_01 – Parameters for OPTION_01
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Path to file – Path to input file
- Sequences collection – Select a source of nucleotide sequences
- Parameters for OPTION_02 – Parameters for OPTION_02
- Path to folder with tracks – Path to folder with tracks
- Track names – Please, select track names
- Path to file – Path to input file
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Promoter regions – Promoter regions
- Path to output folder – Path to output folder
