User contributions
- 16:32, 7 May 2019 (diff | hist) . . (+83) . . Server ICT (top)
- 16:30, 7 May 2019 (diff | hist) . . (+15) . . Server ICT
- 16:09, 7 May 2019 (diff | hist) . . (0) . . Server ICT
- 16:08, 7 May 2019 (diff | hist) . . (-1) . . Server ICT
- 16:07, 7 May 2019 (diff | hist) . . (+51) . . Server ICT
- 16:05, 7 May 2019 (diff | hist) . . (+31) . . Server ICT
- 19:11, 4 April 2019 (diff | hist) . . (+1,000) . . N RAGOUT (Created page with "==Description== Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (con...") (top)
- 19:49, 27 March 2019 (diff | hist) . . (-7) . . QUAST (top)
- 19:48, 27 March 2019 (diff | hist) . . (-4) . . QUAST
- 19:47, 27 March 2019 (diff | hist) . . (+1,580) . . N QUAST (Created page with "==What it does== QUAST = QUality ASsessment Tool. The tool evaluates genome assemblies by computing various metrics. If you have one or multiple genome assemblies, you can a...")
- 14:24, 27 March 2019 (diff | hist) . . (+2) . . Filter SPAdes output (top)
- 14:24, 27 March 2019 (diff | hist) . . (+471) . . N SPAdes stats (Created page with "==What it does== Using the output of SPAdes (a pair of fasta file and stat file for each of the contigs and scaffolds), it produces a coverage vs. contig plot. Each dot repre...") (top)
- 14:16, 27 March 2019 (diff | hist) . . (+374) . . N Filter SPAdes output (Created page with "==What it does== Using the output of SPAdes (a fasta and a stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under ...")
- 19:53, 25 March 2019 (diff | hist) . . (+1,764) . . N SPAdes (Created page with "==What it does== SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades...") (top)
- 19:05, 25 March 2019 (diff | hist) . . (+387) . . Fastx clip (top)
- 19:04, 25 March 2019 (diff | hist) . . (-9) . . Fastx clip
- 18:20, 25 March 2019 (diff | hist) . . (+238) . . N Fastx clip (Created page with "==What it does== This tool clips adapters from the 3'-end of the sequences in a FASTA/FASTQ file. ==Clipping Illustration== [[File:https://toolshed.g2.bx.psu.edu/repository/...")
- 17:35, 25 March 2019 (diff | hist) . . (+11) . . Fastq mcf (top)
- 17:33, 25 March 2019 (diff | hist) . . (+89) . . Fastq mcf
- 17:31, 25 March 2019 (diff | hist) . . (+6) . . Fastq mcf
- 17:31, 25 March 2019 (diff | hist) . . (+8) . . Fastq mcf
- 17:29, 25 March 2019 (diff | hist) . . (+8) . . Fastq mcf
- 17:28, 25 March 2019 (diff | hist) . . (+12) . . Fastq mcf
- 17:23, 25 March 2019 (diff | hist) . . (+3,252) . . Fastq mcf (→Introduction)
- 17:19, 25 March 2019 (diff | hist) . . (+2) . . Fastq mcf
- 17:19, 25 March 2019 (diff | hist) . . (-7) . . Fastq mcf
- 17:17, 25 March 2019 (diff | hist) . . (-7) . . Fastq mcf
- 17:17, 25 March 2019 (diff | hist) . . (-1) . . Fastq mcf
- 17:15, 25 March 2019 (diff | hist) . . (+425) . . N Fastq mcf (Created page with "=Introduction= fastq-mcf attempts to: * Detect & remove sequencing adapters and primers * Detect limited skewing at the ends of reads and clip * Detect poor quality at...")
- 12:18, 13 March 2019 (diff | hist) . . (+179) . . File:KN Upstream 6 viz for ict (1).png (top)
- 12:14, 13 March 2019 (diff | hist) . . (+132) . . Expression mapping (top)
- 19:59, 12 March 2019 (diff | hist) . . (+51) . . Expression mapping
- 19:57, 12 March 2019 (diff | hist) . . (+182) . . N File:Regulators upstream 10 viz Nat Lat Up.png (Expression mapping of anti-inflammatory response showing down-regulation of interleukin-1 β. Negative and positive log fold changes are shown in shades of blue and red, respectively) (top)
- 19:55, 12 March 2019 (diff | hist) . . (-21) . . Expression mapping
- 19:49, 12 March 2019 (diff | hist) . . (+21) . . Expression mapping
- 19:34, 12 March 2019 (diff | hist) . . (+2) . . Expression mapping
- 19:32, 12 March 2019 (diff | hist) . . (+157) . . N Expression mapping (Created page with "With analysis Add expression values one can color diagrams that visualize gene pathways according to their expression in microarray or RNAseq experiments")
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