Difference between revisions of "Ru.biosoft.analysis (plugin)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
− | :0.9. | + | :0.9.10 |
=== Extension points === | === Extension points === | ||
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=== Analysis methods === | === Analysis methods === | ||
Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
− | *[[Affymetrix normalization (analysis)|Affymetrix normalization]] | + | *[[File:Data-Affymetrix-normalization-icon.png]] [[Affymetrix normalization (analysis)|Affymetrix normalization]] |
− | *[[Agilent normalization (analysis)|Agilent normalization]] | + | *[[File:Data-Agilent-normalization-icon.png]] [[Agilent normalization (analysis)|Agilent normalization]] |
− | *[[Annotate table (analysis)|Annotate table]] | + | *[[File:Data-Annotate-diagram-icon.png]] [[Annotate diagram (analysis)|Annotate diagram]] |
− | *[[CRC Analysis]] | + | *[[File:Data-Annotate-table-icon.png]] [[Annotate table (analysis)|Annotate table]] |
− | *[[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]] | + | *[[File:Default-analysis-icon.png]] [[CR cluster selector (analysis)|CR cluster selector]] |
− | *[[Convert table (analysis)|Convert table]] | + | *[[File:Data-CRC-Analysis-icon.png]] [[CRC Analysis]] |
− | *[[Copy folder (analysis)|Copy folder]] | + | *[[File:Default-analysis-icon.png]] [[Check quotas (analysis)|Check quotas]] |
− | *[[Correlation Analysis]] | + | *[[File:Default-analysis-icon.png]] [[Clean up SQL database (analysis)|Clean up SQL database]] |
− | *[[Create folder (analysis)|Create folder]] | + | *[[File:Data-Cluster-analysis-by-K-means-icon.png]] [[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]] |
− | *[[Export element (analysis)|Export element]] | + | *[[File:Data-Convert-table-icon.png]] [[Convert table (analysis)|Convert table]] |
− | *[[Extend network (analysis)|Extend network]] | + | *[[File:Default-analysis-icon.png]] [[Copy data element (analysis)|Copy data element]] |
− | *[[Filter table (analysis)|Filter table]] | + | *[[File:Default-analysis-icon.png]] [[Copy folder (analysis)|Copy folder]] |
− | *[[Fold-Change calculation (analysis)|Fold-Change calculation]] | + | *[[File:Statistics-Correlation-Analysis-icon.png]] [[Correlation Analysis]] |
− | *[[Hypergeometric analysis]] | + | *[[File:Data-Create-folder-icon.png]] [[Create folder (analysis)|Create folder]] |
− | *[[Illumina normalization (analysis)|Illumina normalization]] | + | *[[File:Default-analysis-icon.png]] [[Diagram graph compare analysis]] |
− | *[[Join diagrams (analysis)|Join diagrams]] | + | *[[File:Statistics-Differential-expression-with-DESeq-icon.png]] [[Differential expression with DESeq (analysis)|Differential expression with DESeq]] |
− | *[[Join several tables (analysis)|Join several tables]] | + | *[[File:Admin-Export-element-icon.png]] [[Export element (analysis)|Export element]] |
− | *[[Join table (analysis)|Join table]] | + | *[[File:Molecular-networks-Extend-network-icon.png]] [[Extend network (analysis)|Extend network]] |
− | *[[Meta analysis]] | + | *[[File:Default-analysis-icon.png]] [[Filter duplicate rows (analysis)|Filter duplicate rows]] |
− | *[[Polynomial Regression analysis]] | + | *[[File:Data-Filter-table-icon.png]] [[Filter table (analysis)|Filter table]] |
− | *[[Select table columns (analysis)|Select table columns]] | + | *[[File:Statistics-Fold-Change-calculation-icon.png]] [[Fold-Change calculation (analysis)|Fold-Change calculation]] |
− | *[[Up and Down Identification (analysis)|Up and Down Identification]] | + | *[[File:Default-analysis-icon.png]] [[Group table rows (analysis)|Group table rows]] |
− | *[[Venn diagrams (analysis)|Venn diagrams]] | + | *[[File:Statistics-Hypergeometric-analysis-icon.png]] [[Hypergeometric analysis]] |
+ | *[[File:Data-Illumina-normalization-icon.png]] [[Illumina normalization (analysis)|Illumina normalization]] | ||
+ | *[[File:Molecular-networks-Join-diagrams-icon.png]] [[Join diagrams (analysis)|Join diagrams]] | ||
+ | *[[File:Data-Join-several-tables-icon.png]] [[Join several tables (analysis)|Join several tables]] | ||
+ | *[[File:Data-Join-table-icon.png]] [[Join table (analysis)|Join table]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Merge table columns (analysis)|Merge table columns]] | ||
+ | *[[File:Statistics-Meta-analysis-icon.png]] [[Meta analysis]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Plot bar chart (analysis)|Plot bar chart]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Plot pie chart (analysis)|Plot pie chart]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Plot scatter chart (analysis)|Plot scatter chart]] | ||
+ | *[[File:Statistics-Polynomial-Regression-analysis-icon.png]] [[Polynomial Regression analysis]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Quantile normalization (analysis)|Quantile normalization]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Remove unobservable molecules (analysis)|Remove unobservable molecules]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Select random rows (analysis)|Select random rows]] | ||
+ | *[[File:Data-Select-table-columns-icon.png]] [[Select table columns (analysis)|Select table columns]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Select top rows (analysis)|Select top rows]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Share molecules (analysis)|Share molecules]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Sign test (analysis)|Sign test]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Super annotate table (analysis)|Super annotate table]] | ||
+ | *[[File:Statistics-Table-imputation-icon.png]] [[Table imputation (analysis)|Table imputation]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Transform table (analysis)|Transform table]] | ||
+ | *[[File:Statistics-Up-and-Down-Identification-icon.png]] [[Up and Down Identification (analysis)|Up and Down Identification]] | ||
+ | *[[File:Data-Venn-diagrams-icon.png]] [[Venn diagrams (analysis)|Venn diagrams]] | ||
+ | |||
+ | === Host objects === | ||
+ | JavaScript [[Host object (extension point)|host objects]] defined in this plugin: | ||
+ | *[[Microarray (host object)|microarray]] | ||
+ | *[[Normalize (host object)|normalize]] | ||
+ | *[[Transform (host object)|transform]] | ||
+ | |||
+ | === Reference types === | ||
+ | [[Reference type]]s defined in this plugin: | ||
+ | *[[File:ReferenceType-CategoryType-icon.png]] [[Categories (reference type)|Categories]] | ||
+ | *[[File:ReferenceType-GeneTableType-icon.png]] [[Genes (reference type)|Genes]] | ||
+ | *[[File:ReferenceType-PathwayType-icon.png]] [[Pathways (reference type)|Pathways]] | ||
+ | *[[File:ReferenceType-ProbeTableType-icon.png]] [[Probes (reference type)|Probes]] | ||
+ | *[[File:ReferenceType-ProteinTableType-icon.png]] [[Proteins (reference type)|Proteins]] | ||
+ | *[[File:ReferenceType-SubstanceType-icon.png]] [[Substances (reference type)|Substances]] | ||
+ | *[[File:ReferenceType-TranscriptTableType-icon.png]] [[Transcripts (reference type)|Transcripts]] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
+ | [[Category:ISB plugins]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] |
Latest revision as of 16:35, 12 March 2019
- ID
- ru.biosoft.analysis
- Name
- Common methods of data analysis plug-in
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
Contents[hide] |
[edit] Extension points
Extension points defined in this plugin:
[edit] Analysis methods
Analysis methods defined in this plugin:
Affymetrix normalization
Agilent normalization
Annotate diagram
Annotate table
CR cluster selector
CRC Analysis
Check quotas
Clean up SQL database
Cluster analysis by K-means
Convert table
Copy data element
Copy folder
Correlation Analysis
Create folder
Diagram graph compare analysis
Differential expression with DESeq
Export element
Extend network
Filter duplicate rows
Filter table
Fold-Change calculation
Group table rows
Hypergeometric analysis
Illumina normalization
Join diagrams
Join several tables
Join table
Merge table columns
Meta analysis
Plot bar chart
Plot pie chart
Plot scatter chart
Polynomial Regression analysis
Quantile normalization
Remove unobservable molecules
Select random rows
Select table columns
Select top rows
Share molecules
Sign test
Super annotate table
Table imputation
Transform table
Up and Down Identification
Venn diagrams
[edit] Host objects
JavaScript host objects defined in this plugin:
[edit] Reference types
Reference types defined in this plugin: