Difference between revisions of "Ru.biosoft.analysis (plugin)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Version | ;Version | ||
− | :0.9. | + | :0.9.10 |
=== Extension points === | === Extension points === | ||
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*[[File:Data-Affymetrix-normalization-icon.png]] [[Affymetrix normalization (analysis)|Affymetrix normalization]] | *[[File:Data-Affymetrix-normalization-icon.png]] [[Affymetrix normalization (analysis)|Affymetrix normalization]] | ||
*[[File:Data-Agilent-normalization-icon.png]] [[Agilent normalization (analysis)|Agilent normalization]] | *[[File:Data-Agilent-normalization-icon.png]] [[Agilent normalization (analysis)|Agilent normalization]] | ||
+ | *[[File:Data-Annotate-diagram-icon.png]] [[Annotate diagram (analysis)|Annotate diagram]] | ||
*[[File:Data-Annotate-table-icon.png]] [[Annotate table (analysis)|Annotate table]] | *[[File:Data-Annotate-table-icon.png]] [[Annotate table (analysis)|Annotate table]] | ||
+ | *[[File:Default-analysis-icon.png]] [[CR cluster selector (analysis)|CR cluster selector]] | ||
*[[File:Data-CRC-Analysis-icon.png]] [[CRC Analysis]] | *[[File:Data-CRC-Analysis-icon.png]] [[CRC Analysis]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Check quotas (analysis)|Check quotas]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Clean up SQL database (analysis)|Clean up SQL database]] | ||
*[[File:Data-Cluster-analysis-by-K-means-icon.png]] [[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]] | *[[File:Data-Cluster-analysis-by-K-means-icon.png]] [[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]] | ||
*[[File:Data-Convert-table-icon.png]] [[Convert table (analysis)|Convert table]] | *[[File:Data-Convert-table-icon.png]] [[Convert table (analysis)|Convert table]] | ||
− | *[[File: | + | *[[File:Default-analysis-icon.png]] [[Copy data element (analysis)|Copy data element]] |
+ | *[[File:Default-analysis-icon.png]] [[Copy folder (analysis)|Copy folder]] | ||
*[[File:Statistics-Correlation-Analysis-icon.png]] [[Correlation Analysis]] | *[[File:Statistics-Correlation-Analysis-icon.png]] [[Correlation Analysis]] | ||
*[[File:Data-Create-folder-icon.png]] [[Create folder (analysis)|Create folder]] | *[[File:Data-Create-folder-icon.png]] [[Create folder (analysis)|Create folder]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Diagram graph compare analysis]] | ||
+ | *[[File:Statistics-Differential-expression-with-DESeq-icon.png]] [[Differential expression with DESeq (analysis)|Differential expression with DESeq]] | ||
*[[File:Admin-Export-element-icon.png]] [[Export element (analysis)|Export element]] | *[[File:Admin-Export-element-icon.png]] [[Export element (analysis)|Export element]] | ||
*[[File:Molecular-networks-Extend-network-icon.png]] [[Extend network (analysis)|Extend network]] | *[[File:Molecular-networks-Extend-network-icon.png]] [[Extend network (analysis)|Extend network]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Filter duplicate rows (analysis)|Filter duplicate rows]] | ||
*[[File:Data-Filter-table-icon.png]] [[Filter table (analysis)|Filter table]] | *[[File:Data-Filter-table-icon.png]] [[Filter table (analysis)|Filter table]] | ||
*[[File:Statistics-Fold-Change-calculation-icon.png]] [[Fold-Change calculation (analysis)|Fold-Change calculation]] | *[[File:Statistics-Fold-Change-calculation-icon.png]] [[Fold-Change calculation (analysis)|Fold-Change calculation]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Group table rows (analysis)|Group table rows]] | ||
*[[File:Statistics-Hypergeometric-analysis-icon.png]] [[Hypergeometric analysis]] | *[[File:Statistics-Hypergeometric-analysis-icon.png]] [[Hypergeometric analysis]] | ||
*[[File:Data-Illumina-normalization-icon.png]] [[Illumina normalization (analysis)|Illumina normalization]] | *[[File:Data-Illumina-normalization-icon.png]] [[Illumina normalization (analysis)|Illumina normalization]] | ||
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*[[File:Data-Join-several-tables-icon.png]] [[Join several tables (analysis)|Join several tables]] | *[[File:Data-Join-several-tables-icon.png]] [[Join several tables (analysis)|Join several tables]] | ||
*[[File:Data-Join-table-icon.png]] [[Join table (analysis)|Join table]] | *[[File:Data-Join-table-icon.png]] [[Join table (analysis)|Join table]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Merge table columns (analysis)|Merge table columns]] | ||
*[[File:Statistics-Meta-analysis-icon.png]] [[Meta analysis]] | *[[File:Statistics-Meta-analysis-icon.png]] [[Meta analysis]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Plot bar chart (analysis)|Plot bar chart]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Plot pie chart (analysis)|Plot pie chart]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Plot scatter chart (analysis)|Plot scatter chart]] | ||
*[[File:Statistics-Polynomial-Regression-analysis-icon.png]] [[Polynomial Regression analysis]] | *[[File:Statistics-Polynomial-Regression-analysis-icon.png]] [[Polynomial Regression analysis]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Quantile normalization (analysis)|Quantile normalization]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Remove unobservable molecules (analysis)|Remove unobservable molecules]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Select random rows (analysis)|Select random rows]] | ||
*[[File:Data-Select-table-columns-icon.png]] [[Select table columns (analysis)|Select table columns]] | *[[File:Data-Select-table-columns-icon.png]] [[Select table columns (analysis)|Select table columns]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Select top rows (analysis)|Select top rows]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Share molecules (analysis)|Share molecules]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Sign test (analysis)|Sign test]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Super annotate table (analysis)|Super annotate table]] | ||
+ | *[[File:Statistics-Table-imputation-icon.png]] [[Table imputation (analysis)|Table imputation]] | ||
+ | *[[File:Default-analysis-icon.png]] [[Transform table (analysis)|Transform table]] | ||
*[[File:Statistics-Up-and-Down-Identification-icon.png]] [[Up and Down Identification (analysis)|Up and Down Identification]] | *[[File:Statistics-Up-and-Down-Identification-icon.png]] [[Up and Down Identification (analysis)|Up and Down Identification]] | ||
*[[File:Data-Venn-diagrams-icon.png]] [[Venn diagrams (analysis)|Venn diagrams]] | *[[File:Data-Venn-diagrams-icon.png]] [[Venn diagrams (analysis)|Venn diagrams]] | ||
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=== Reference types === | === Reference types === | ||
[[Reference type]]s defined in this plugin: | [[Reference type]]s defined in this plugin: | ||
+ | *[[File:ReferenceType-CategoryType-icon.png]] [[Categories (reference type)|Categories]] | ||
*[[File:ReferenceType-GeneTableType-icon.png]] [[Genes (reference type)|Genes]] | *[[File:ReferenceType-GeneTableType-icon.png]] [[Genes (reference type)|Genes]] | ||
+ | *[[File:ReferenceType-PathwayType-icon.png]] [[Pathways (reference type)|Pathways]] | ||
*[[File:ReferenceType-ProbeTableType-icon.png]] [[Probes (reference type)|Probes]] | *[[File:ReferenceType-ProbeTableType-icon.png]] [[Probes (reference type)|Probes]] | ||
*[[File:ReferenceType-ProteinTableType-icon.png]] [[Proteins (reference type)|Proteins]] | *[[File:ReferenceType-ProteinTableType-icon.png]] [[Proteins (reference type)|Proteins]] | ||
+ | *[[File:ReferenceType-SubstanceType-icon.png]] [[Substances (reference type)|Substances]] | ||
*[[File:ReferenceType-TranscriptTableType-icon.png]] [[Transcripts (reference type)|Transcripts]] | *[[File:ReferenceType-TranscriptTableType-icon.png]] [[Transcripts (reference type)|Transcripts]] | ||
Latest revision as of 16:35, 12 March 2019
- ID
- ru.biosoft.analysis
- Name
- Common methods of data analysis plug-in
- Provider
- Institute of Systems Biology
- Version
- 0.9.10
Contents[hide] |
[edit] Extension points
Extension points defined in this plugin:
[edit] Analysis methods
Analysis methods defined in this plugin:
Affymetrix normalization
Agilent normalization
Annotate diagram
Annotate table
CR cluster selector
CRC Analysis
Check quotas
Clean up SQL database
Cluster analysis by K-means
Convert table
Copy data element
Copy folder
Correlation Analysis
Create folder
Diagram graph compare analysis
Differential expression with DESeq
Export element
Extend network
Filter duplicate rows
Filter table
Fold-Change calculation
Group table rows
Hypergeometric analysis
Illumina normalization
Join diagrams
Join several tables
Join table
Merge table columns
Meta analysis
Plot bar chart
Plot pie chart
Plot scatter chart
Polynomial Regression analysis
Quantile normalization
Remove unobservable molecules
Select random rows
Select table columns
Select top rows
Share molecules
Sign test
Super annotate table
Table imputation
Transform table
Up and Down Identification
Venn diagrams
[edit] Host objects
JavaScript host objects defined in this plugin:
[edit] Reference types
Reference types defined in this plugin: